Name (not necessary):
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Nucleotide sequence without
name:
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(case insensitive,
disregarded all letters except: agctuswrymkhbdvn)
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Nucleotide sequence:
Output: nucleotides
in one line;
display the initial
sequence;
display complementary sequence
in 5' --> 3' direction;
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Translation:
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Output:
aminoacids in one line, code:
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Frame number:
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+1; |
+2; |
+3; |
all |
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-1; |
-2; |
-3; |
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Alignment:
align amino acids
sequences relative to nucleic acid.
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This program translate nucleic acid sequence. Rare
codons may be displayed with "Search
of rare codons in nucleotide sequence".
For manipulations with nucleic
acid sequence (reverse, reverse/complement, double
stranded) it is possible to use
Sequence Utilities program.
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Standard symbols for polymorph nucleotides:
S |
g,C |
H |
A,C,T |
W |
A,T |
B |
C,g,T |
R |
A,g |
D |
A,g,T |
Y |
C,T |
V |
A,C,g |
M |
A,C |
N |
A,g,C,T |
K |
g,T |
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